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Federated Query FQ1: get UniProt AC and Mnemonic for PRO term FQ2: get all PRO human genes whose UniProt counterpart has variants with loss of function implicated in disease. FQ3: get all PRO human genes whose UniProt counterpart has variants with gain of function implicated in disease.

Proteoforms Query PQ1: get all PRO terms that are modified forms. PQ2: get all PRO terms that are cleaved forms. PQ3: get PRO terms with a specified protein modification. PQ4: get proteoforms associated with disease progression. PQ5: get phospho-proteoforms and their kinases.

General Query GQ1: get direct subclasses of TGF-beta superfamily receptor type-1. GQ2: get all subclasses of TGF-beta superfamily receptor type-1. GQ3: get all functional annotations for PR:000037190. GQ4: get PRO terms that pertain to products of a specified gene. GQ5: get information pertaining to the gene encoding a protein of interest. GQ6: get all PRO terms with functional annotation GO:0007179.