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Protein Ontology Linked Open Data

Data Dumps

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Release 64.0 (2021-09-03)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 12,306,435 8 2,072,881 2,363,287 48 3,231,741
paf <http://pir.georgetown.edu/pro/paf> 91,693 4 8,311 19,729 22 31,574
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 94 1 24 24 4 47
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 2,732 1 493 493 4 1,361
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 72,307 1 18,256 18,256 4 35,796
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 61,473 1 15,529 15,529 4 30,414
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 8,614 1 1,691 1,691 4 4,272
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 48,960 1 10,172 10,172 4 24,259
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 65,922 1 11,219 11,219 5 25,374
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 29,134 1 7,366 7,366 4 14,401
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 4,974 1 1,261 1,261 4 2,453
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 382,725 1 55,089 55,089 4 185,903
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 872,568 1 176,462 176,462 5 337,203
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 1,003 1 41 41 4 500
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 2,263 1 463 463 5 875
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 7,111 1 1,800 1,800 4 3,512
void <https://sparql.proconsortium.org/.well-known/void> 2,368 7 74 292 63 605

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
pro pro.ttl text/turtle 708,566,907 6c3d6659a35ead25b38644458093bc31
paf.rdf paf.rdf application/rdf+xml 11,891,056 0ec6117c1c4dfc0a7bf7fe6ae1243148
paf paf.ttl text/turtle 2,953,020 d764f0ad2295a385ae4770f46bfa5987
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 5,440 ecb8311ef4b67d078edadfc43bdfa2b9
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 143,648 7dba393e37a824c04fd8bd6859644dd8
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 3,408,122 4cda5506e1c083cd2886a3be515e9779
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 2,932,348 57da587815139832b50f5a5798d92396
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 431,371 c0ed68cc76bdd7aab4ca8a6dd1da3ff3
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 2,617,914 b16045313d0e67f0617136deb4f63a17
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 3,620,035 8792e6ba16f62b18b19f4ea892681397
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 1,377,302 2dd6cdfe0c9f403163cf5e33a826e9b0
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 248,176 1889fde7c9f2c7cbc8def83b120e1a8c
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 19,616,927 a5e02f307d2839446b0a0eb03e05ed1c
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 45,162,294 88a7d778336dbe4d9397e7c79e328c5d
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 57,694 97774ff11540b43fdd19e8dda332ab18
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 134,825 7bc38bb01c5608c9d2ebe04d0e71af51
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 387,283 719c74010c159a963fdd62b02d2ef775
pro.owl pro.owl application/rdf+xml 1,234,275,661 fd7df9bfab097528d07b90466ca24e2b
void.rdf void.rdf application/rdf+xml 517,043 5dc47df917b1ca75fdd0659b40aa43d9
void void.ttl text/turtle 154,504 f30c818f0c32323492b8e6b63612f8fa