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Protein Ontology Linked Open Data

Data Dumps

Release 61.0 (2020-08-18)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 11,858,720 8 1,996,180 2,285,489 48 3,129,222
paf <http://pir.georgetown.edu/pro/paf> 91,407 4 8,313 19,733 22 31,301
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 48 0 0 24 2 24
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 1,758 0 0 493 2 879
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 36,542 0 0 18,268 2 18,271
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 31,024 0 0 15,509 2 15,512
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 5,310 0 0 1,693 2 2,655
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 29,042 0 0 10,169 2 14,521
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 43,998 0 0 11,220 3 14,666
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 14,690 0 0 7,343 2 7,345
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 2,522 0 0 1,261 2 1,261
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 274,308 0 0 54,950 2 133,016
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 527,418 0 0 175,793 3 169,975
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 938 0 0 41 2 469
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 1,407 0 0 469 3 469
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 3,570 0 0 1,785 2 1,785
void <https://sparql.proconsortium.org/.well-known/void> 2326 7 74 292 63 606

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
pro.owl pro.owl application/rdf+xml 1,175,026,643 8df24dbb2d485ff5b7f0d157bf423aba
pro.ttl pro.ttl text/turtle 669,462,971 d2f280c7bfb411e01c1d79579785e7ad
paf.rdf paf.rdf application/rdf+xml 11,838,029 8bcb2e2894d138b601c05e7d9713be22
paf paf.ttl text/turtle 2,939,518 17f2608e6a5ec43f818c9887d65ae3ec
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 3,166 f9d5b9a6001601ed2c4f702f27a13245
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 95,067 90f53197cc72e3876a91400c239522fe
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 1,649,648 106111943957299dad5c4b0fa92048b8
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 1,431,542 62a9858011665a6ca298bf1a76b40982
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 270,700 4d70fb536ce5f3e005053a7e17032e69
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 1,624,784 3b546213c00a1514ea39492091e0a5c9
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 2,376,996 31e146397b3ee409227869a61c650cae
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 667,878 866403c543e6309de30a23be78cba81d
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 125,090 016534a5caa0c2086c546ad357538a21
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 14,081,152 8cfaff431e6ef93d18a6324c18f69d42
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 25,874,408 ac90bb09b35993dbcbe930020990d25f
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 54,306 1d105d61ed329d4c268b3f09337a28d7
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 82,348 76532b886a6183944e6cbdf100a84dca
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 209,106 081651457e83d183d2a285573eec2cc6
void.rdf void.rdf application/rdf+xml 507,275 3c8b853877d9ce7a6b19d8dbb61c8a18
void void.ttl text/turtle 152,984 2ea18cdd9c85780aab8af1450a395210