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Protein Ontology Linked Open Data

Data Dumps

Release 62.0 (2020-12-11)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 12,271,668 8 2,067,234 2,357,038 48 3,223,798
paf <http://pir.georgetown.edu/pro/paf> 91,703 4 8,313 19,733 22 31,600
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 48 0 0 24 2 24
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 1,758 0 0 493 2 879
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 36,530 0 0 18,262 2 18,265
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 31,026 0 0 15,510 2 15,513
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 5,310 0 0 1,693 2 2,655
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 29,060 0 0 10,172 2 14,530
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 43,995 0 0 11,219 3 14,665
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 14,708 0 0 7,352 2 7,354
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 2,522 0 0 1,261 2 1,261
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 274,622 0 0 55,014 2 133,159
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 528,177 0 0 176,046 3 170,130
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 938 0 0 41 2 469
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 1,407 0 0 469 3 469
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 3,574 0 0 1,787 2 1,787
void <https://sparql.proconsortium.org/.well-known/void> 2326 7 74 292 63 613

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
pro.owl pro.owl application/rdf+xml 16 8bf0176e5cc7ba33af9d3ddb169dca84
pro.ttl pro.ttl text/turtle 16 77d2be89f9e21650e50db6e1291b7286
paf.rdf paf.rdf application/rdf+xml 11,891,629 6cd8c29fd44c0b363772f5e291a5a00e
paf paf.ttl text/turtle 2,952,797 a3ab2d97dc9386ed1f17a257345dcbb9
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 3,166 f9d5b9a6001601ed2c4f702f27a13245
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 95,067 90f53197cc72e3876a91400c239522fe
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 1,649,102 7c1c5e56612c7049f3b65ed7e106dbe7
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 1,431,641 166ec98478ee088f8f70a72130f78e5f
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 270,700 c496e7f68a15c3011444adaee0dcf2c0
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 1,625,757 dd8509fca1133f457da0c67733959add
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 2,376,824 0636a1d1b76f2afada57ae4ff8967523
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 668,705 64df83ad38292ecc9a162e6689d865b8
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 125,090 016534a5caa0c2086c546ad357538a21
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 14,097,449 6a0bc3807c380458f3ba5dacb4602b93
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 25,913,241 92208b74fa8bf2b8c98118cf3acf026c
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 54,306 1d105d61ed329d4c268b3f09337a28d7
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 82,348 76532b886a6183944e6cbdf100a84dca
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 209,340 98755b4a00cb4798596fdadb300e8dcf
void.rdf void.rdf application/rdf+xml 507,275 88ac58bb620ebdbf7cd055ee41fc0cf2
void void.ttl text/turtle 152,984 e2f3961757ed05cefca8b296dd363180