FAIRness Assessment for PRO
The guiding principles of FAIR data aim to facilitate the discovery, integration and analysis of relevant datasets by humans and machines by making them Findable (F), Accessible (A), Interoperable (I) and Reusable (R) (Wilkinson, M. D. et al). As a community resource, we strive to produce FAIR resources, disseminate regular updates of our data, support multiple methods for accessing, querying and downloading the data in various formats and provide documentation both for scientists and programmers. The formal FAIRness assessment results for PRO are presented below.
Metric | Requirement | Resource | Resource data/content |
---|---|---|---|
F1A | IRI for a registered identifier scheme for your resource's IRI | PURL schema | PURL schema |
http://purlz.org | http://purlz.org | ||
F1B | IRI to a document describing the persistency policy for the identifier of this data | http://purlz.org | http://purlz.org |
https://lod.proconsortium.org/rdf.html#uri | |||
F2 | IRI for machine-readable metadata for the resource | https://lod.proconsortium.org/releases/latest/void.ttl | https://lod.proconsortium.org/PR_000025934 |
IRI to file format for this metadata | https://www.w3.org/TR/void/ | https://www.w3.org/TR/void/ | |
F3 | Is the resource identifier specified in the metadata? | Yes | Yes |
F4 | URL to a search engine indexing your resource | https://www.google.com | https://www.google.com |
Search query/terms | "Protein Ontology" -> First hit | "PR_000025934" -> First hit | |
A1.1 | URL to the description of the protocol | HTTP | HTTP |
https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol | https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol | ||
Is the protocol open? | Yes | Yes | |
Is the protocol (royalty) free? | Yes | Yes | |
A1.2 | Is authorization required to access the content of your resource? | No | No |
A2 | URL to metadata longevity plan | https://lod.proconsortium.org/release.html | Provided at the dataset level |
I1 | URL to a specification language | RDFS and OWL ontology | RDFS and OWL ontology |
https://www.w3.org/TR/rdf-schema/ | https://www.w3.org/TR/rdf-schema/ | ||
https://www.w3.org/TR/owl2-overview/ | https://www.w3.org/TR/owl2-overview/ | ||
I2 | Maximum 3 IRIs for vacabularies used within the (meta)data | http://purl.org/dc/terms/ | dcterms:title "PRO Linked Open Data"@en |
http://www.w3.org/ns/dcat# | dcat:keyword "Protein Ontology"^^xsd:string, "Linked Open Data"^^xsd:string | ||
http://www.w3.org/2004/02/skos/core# | void:linkPredicate skos:closeMatch | ||
I3 | URL to a LinkSet (https://www.w3.org/TR/void/) for the resource | https://lod.proconsortium.org/releases/latest/void.ttl | Provided at the dataset level |
R1.1 | URL to license/terms of use for the resource | https://creativecommons.org/licenses/by/4.0/ | |
R1.2 | Maximum 3 IRIs used to describe the provenance of the resource | http://purl.org/dc/terms/ | dcterms:accrualPeriodicity freq:quarterly |
http://xmlns.com/foaf/0.1/ | dcterms:publisher [ foaf:page |
||
http://purl.org/pav/ | pav:hasCurrentVersion :prolod60_0 | ||
Maximum 3 IRIs used to describe domain information | http://purl.obolibrary.org/obo/pr# | oboInOwl:hasSynonymType pr:PRO-short-label | |
http://purl.obolibrary.org/obo/ | obo:PR_Q7TMZ5 | ||
http://www.geneontology.org/formats/oboInOwl# | oboInOwl:hasSynonymType pr:PRO-short-label | ||
R1.3 | IRI that represents certification from a recognized authoriry | http://yummydata.org | Provided at the dataset level |