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Protein Ontology Linked Open Data

FAIRness Assessment for PRO

The guiding principles of FAIR data aim to facilitate the discovery, integration and analysis of relevant datasets by humans and machines by making them Findable (F), Accessible (A), Interoperable (I) and Reusable (R) (Wilkinson, M. D. et al). As a community resource, we strive to produce FAIR resources, disseminate regular updates of our data, support multiple methods for accessing, querying and downloading the data in various formats and provide documentation both for scientists and programmers. The formal FAIRness assessment results for PRO are presented below.


Metric Requirement Resource Resource data/content
F1A IRI for a registered identifier scheme for your resource's IRI PURL schema PURL schema
http://purlz.org http://purlz.org
F1B IRI to a document describing the persistency policy for the identifier of this data http://purlz.org http://purlz.org
https://lod.proconsortium.org/rdf.html#uri
F2 IRI for machine-readable metadata for the resource https://lod.proconsortium.org/releases/latest/void.ttl https://lod.proconsortium.org/PR_000025934
IRI to file format for this metadata https://www.w3.org/TR/void/ https://www.w3.org/TR/void/
F3 Is the resource identifier specified in the metadata? Yes Yes
F4 URL to a search engine indexing your resource https://www.google.com https://www.google.com
Search query/terms "Protein Ontology" -> First hit "PR_000025934" -> First hit
A1.1 URL to the description of the protocol HTTP HTTP
https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol https://en.wikipedia.org/wiki/Hypertext_Transfer_Protocol
Is the protocol open? Yes Yes
Is the protocol (royalty) free? Yes Yes
A1.2 Is authorization required to access the content of your resource? No No
A2 URL to metadata longevity plan https://lod.proconsortium.org/release.html Provided at the dataset level
I1 URL to a specification language RDFS and OWL ontology RDFS and OWL ontology
https://www.w3.org/TR/rdf-schema/ https://www.w3.org/TR/rdf-schema/
https://www.w3.org/TR/owl2-overview/ https://www.w3.org/TR/owl2-overview/
I2 Maximum 3 IRIs for vacabularies used within the (meta)data http://purl.org/dc/terms/ dcterms:title "PRO Linked Open Data"@en
http://www.w3.org/ns/dcat# dcat:keyword "Protein Ontology"^^xsd:string, "Linked Open Data"^^xsd:string
http://www.w3.org/2004/02/skos/core# void:linkPredicate skos:closeMatch
I3 URL to a LinkSet (https://www.w3.org/TR/void/) for the resource https://lod.proconsortium.org/releases/latest/void.ttl Provided at the dataset level
R1.1 URL to license/terms of use for the resource https://creativecommons.org/licenses/by/4.0/
R1.2 Maximum 3 IRIs used to describe the provenance of the resource http://purl.org/dc/terms/ dcterms:accrualPeriodicity freq:quarterly
http://xmlns.com/foaf/0.1/ dcterms:publisher [ foaf:page ]
http://purl.org/pav/ pav:hasCurrentVersion :prolod60_0
Maximum 3 IRIs used to describe domain information http://purl.obolibrary.org/obo/pr# oboInOwl:hasSynonymType pr:PRO-short-label
http://purl.obolibrary.org/obo/ obo:PR_Q7TMZ5
http://www.geneontology.org/formats/oboInOwl# oboInOwl:hasSynonymType pr:PRO-short-label
R1.3 IRI that represents certification from a recognized authoriry http://yummydata.org Provided at the dataset level