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Protein Ontology Linked Open Data

Data Dumps

Release 66.0 (2022-03-30)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 12,364,380 8 2,079,672 2,368,167 48 3,243,920
paf <http://pir.georgetown.edu/pro/paf> 91,643 4 8,307 19,717 22 31,565
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 94 1 24 24 4 47
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 2,732 1 493 493 4 1,361
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 72,302 1 18,255 18,255 4 35,793
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 61,603 1 15,562 15,562 4 30,478
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 8,833 1 1,746 1,746 4 4,380
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 48,960 1 10,172 10,172 4 24,259
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 65,922 1 11,219 11,219 5 25,374
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 29,310 1 7,410 7,410 4 14,489
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 4,974 1 1,261 1,261 4 2,453
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 383,402 1 55,116 55,116 4 186,227
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 873,284 1 176,649 176,649 5 337,357
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 1,003 1 41 41 4 500
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 2,263 1 463 463 5 875
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 7,147 1 1,809 1,809 4 3,530
void <https://sparql.proconsortium.org/.well-known/void> 2,368 7 74 292 63 610

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
pro.owl pro.owl application/rdf+xml 1,241,028,103 23ff3e27ca87a9b55c25b7f533a7ff21
pro pro.ttl text/turtle 710,960,171 adea7af0465b7c95b941496afb9f1494
paf.rdf paf.rdf application/rdf+xml 11,884,859 1f2be4e4f9669d2ecd01f3c2a7dffde4
paf paf.ttl text/turtle 2,951,252 5a06ad6af95df30cf1777d28371a3aba
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 7,512 137fdd7363967aeae2f4b08efb04f55a
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 143,648 7dba393e37a824c04fd8bd6859644dd8
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 3,473,824 b8ed624304d5985165c3061bc428e739
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 3,040,590 1679a089ebee0b5c76807001d1fae39e
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 540,765 f9b80bbbdc7e1c02ecde3b5b4cd22db2
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 2,620,214 dc1c56d4953a973ec2cbdc343a4bd411
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 3,619,378 aeed4dbef9a4b6e5da13e67301f446d5
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 1,413,966 2d982438b2ffdc584e2444d48cb890d4
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 259,800 c9134d248a5a2327f34a18029c7ce710
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 19,952,400 e444c513ff88a01d599661c393313300
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 45,248,358 af14726c9ddade8e22733d3a04e9a642
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 57,694 97774ff11540b43fdd19e8dda332ab18
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 134,825 7bc38bb01c5608c9d2ebe04d0e71af51
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 405,176 e5e710edceed27272b15b1faf8253360
void.rdf void.rdf application/rdf+xml 517,043 62f246b55f2bac402e74ffa30f851412
void void.ttl text/turtle 154,504 2076ead91a713a0fd8041920d8134daa