Protein Ontology Linked Open Data

Data Dumps

Release 68.0 (2023-02-11)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 12,393,937 8 2,086,375 2,375,716 48 3,252,262
paf <http://pir.georgetown.edu/pro/paf> 82,756 4 7,369 17,543 22 27,879
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 59 1 15 15 4 30
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 2,732 1 493 493 4 1,361
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 73,885 1 18,786 18,786 4 36,314
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 63,981 1 16,290 16,290 4 31,400
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 10,844 1 2,229 2,229 4 5,367
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 49,006 1 10,187 10,187 4 24,271
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 65,930 1 11,220 11,220 5 25,373
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 30,144 1 7,655 7,655 4 14,833
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 5,212 1 1,323 1,323 4 2,567
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 390,061 1 55,757 55,757 4 189,210
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 876,393 1 177,461 177,461 5 337,965
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 1,003 1 41 41 4 500
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 2,263 1 463 463 5 875
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 7,482 1 1,898 1,898 4 3,687
void <https://sparql.proconsortium.org/.well-known/void> 2,368 7 74 292 63 610

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
paf.rdf paf.rdf application/rdf+xml 10,712,982 bba0beaa1927143927e856822207f52c
paf paf.ttl text/turtle 2,695,724 1927acdda98deb58cd725feff38e2753
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 3,541 43f5f90db07f5479a5a878fa0163a759
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 143,648 7dba393e37a824c04fd8bd6859644dd8
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 3,473,184 9b36eecb6be597e206bb3d51691969b2
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 3,043,011 13897cbc0cab5787765af5d7a28ac103
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 542,085 1562bff898589410b9e4b13a377c770d
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 2,620,318 7f47d9b968cf6eb6e9ce73e0728b4e4f
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 3,620,518 178da94b1b25ac3f8788def7c9471d49
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 1,422,936 f5bafba28d618dde0882982c94232d9b
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 259,800 c9134d248a5a2327f34a18029c7ce710
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 19,982,681 5244ffaa94cd8ed1d8fae1d1859492a9
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 45,328,723 37383bab410ad55bb09af540cae8f157
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 57,694 97774ff11540b43fdd19e8dda332ab18
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 134,825 7bc38bb01c5608c9d2ebe04d0e71af51
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 407,303 e020cbcc51cee676e9b660fdbcd6dd3b
pro.owl pro.owl application/rdf+xml 1,244,158,081 ba4d7f212f7b4e1b4535f2398acd7b11
pro pro.ttl text/turtle 713,038,522 353d6a8075bc1cfca7fe9be2aa7f6450
void.rdf void.rdf application/rdf+xml 517,045 5b75b40b30ca7809a0890442046c1565
void void.ttl text/turtle 154,506 c4501c73dd3733ab74b9438ebdbd1e59