Protein Ontology Linked Open Data

Data Dumps

Release 65.0 (2021-12-13)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 12,320,241 8 2,074,869 2,365,330 48 3,236,150
paf <http://pir.georgetown.edu/pro/paf> 91,640 4 8,307 19,717 22 31,562
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 94 1 24 24 4 47
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 2,732 1 493 493 4 1,361
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 72,302 1 18,255 18,255 4 35,793
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 61,603 1 15,562 15,562 4 30,478
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 8,833 1 1,746 1,746 4 4,380
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 48,960 1 10,172 10,172 4 24,259
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 65,922 1 11,219 11,219 5 25,374
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 29,310 1 7,410 7,410 4 14,489
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 4,974 1 1,261 1,261 4 2,453
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 383,402 1 55,116 55,116 4 186,227
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 873,284 1 176,649 176,649 5 337,357
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 1,003 1 41 41 4 500
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 2,263 1 463 463 5 875
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 7,147 1 1,809 1,809 4 3,530
void <https://sparql.proconsortium.org/.well-known/void> 2,368 7 74 292 63 610

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
pro.owl pro.owl application/rdf+xml 1,235,756,817 b89fd53a553498b4f9c32893ccb79210
pro pro.ttl text/turtle 709,266,723 dc0e68712c379e9d9850a1f1feddc630
paf.rdf paf.rdf application/rdf+xml 11,884,348 ae40265335d02764842eb67c6646f447
paf paf.ttl text/turtle 2,951,148 a71b288fd8227915e569e79be32cc294
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 5,440 ecb8311ef4b67d078edadfc43bdfa2b9
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 143,648 7dba393e37a824c04fd8bd6859644dd8
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 3,407,908 130db5c70e4249fcab73b8da6881bf59
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 2,938,662 d0ac67191f07f534314f29ac7c39c853
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 442,226 49e9fab8b7be413195bcc05f8ed1fa33
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 2,617,914 b16045313d0e67f0617136deb4f63a17
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 3,620,035 8792e6ba16f62b18b19f4ea892681397
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 1,385,712 6554ddd9b52644916f3e031b473635b6
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 248,176 1889fde7c9f2c7cbc8def83b120e1a8c
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 19,651,358 2be3223cbfa47230d53b5bda296b1ba8
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 45,193,798 7588840303dbd7afd67d418ee355e3e7
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 57,694 97774ff11540b43fdd19e8dda332ab18
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 134,825 7bc38bb01c5608c9d2ebe04d0e71af51
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 389,209 0b1cb565b730556bbb66dd5c9a60c036
void.rdf void.rdf application/rdf+xml 517,043 4e2f0c63c86dac7c4820e282d1f3b2bd
void void.ttl text/turtle 154,504 52772577dc6ed491f7c60cd1f76b47ca