Protein Ontology Linked Open Data

Data Dumps

Release 60.0 (2020-04-22)
(see VoID.ttl for Dataset descriptions. Previous releases can be found here). The statistics for PRO database can be found at here.
Dataset RDF Metrics (Virtuoso)
Named Graph Triples Classes Entities Subjects Predicates Objects
pro <http://purl.obolibrary.org/obo/pr> 11,799,102 8 1,986,510 2,276,224 48 3,118,799
paf <http://pir.georgetown.edu/pro/paf> 91,407 4 8,313 19,733 22 31,301
pro-ensembl-closeMatch-linkset <https://lod.proconsortium.org/ensembl-closeMatch> 46 0 0 23 2 23
pro-ensemblbacteria-closeMatch-linkset <https://lod.proconsortium.org/ensemblbacteria-closeMatch> 1,740 0 0 486 2 870
pro-hgnc-closeMatch-linkset <https://lod.proconsortium.org/hgnc-closeMatch> 35,098 0 0 17,547 2 17,549
pro-mgi-closeMatch-linkset <https://lod.proconsortium.org/mgi-closeMatch> 29,738 0 0 14,866 2 14,869
pro-ncbigene-closeMatch-linkset <https://lod.proconsortium.org/ncbigene-closeMatch> 5,226 0 0 1,650 2 2,613
pro-reactome-closeMatch-linkset <https://lod.proconsortium.org/reactome-closeMatch> 26,868 0 0 9,535 2 13,434
pro-reactome-exactMatch-linkset <https://lod.proconsortium.org/reactome-exactMatch> 41,955 0 0 10,753 3 13,985
pro-rgd-closeMatch-linkset <https://lod.proconsortium.org/rgd-closeMatch> 14,236 0 0 7,116 2 7,118
pro-sgd-closeMatch-linkset <https://lod.proconsortium.org/sgd-closeMatch> 2,442 0 0 1,221 2 1,221
pro-uniprotkb-closeMatch-linkset <https://lod.proconsortium.org/uniprotkb-closeMatch> 264,646 0 0 53,156 2 128,558
pro-uniprotkb-exactMatch-linkset <https://lod.proconsortium.org/uniprotkb-exactMatch> 520,293 0 0 173,418 3 167,981
pro-uniprotkbvar-closeMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-closeMatch> 896 0 0 38 2 448
pro-uniprotkbvar-exactMatch-linkset <https://lod.proconsortium.org/uniprotkbvar-exactMatch> 1,353 0 0 451 3 451
pro-wormbase-closeMatch-linkset <https://lod.proconsortium.org/wormbase-closeMatch> 3,456 0 0 1,728 2 1,728
void <https://sparql.proconsortium.org/.well-known/void> 2326 7 74 292 63 606

SPARQL queries used to calculate statistics can be found here.


Dataset File Name Format File Size (Bytes) MD5
pro.owl pro.owl application/rdf+xml 1,168,475,695 6d509043be0cb4058ce9599e0f54f639
pro pro.ttl text/turtle 666,444,009 4e43ec5797045051066a75297232be84
paf.rdf paf.rdf application/rdf+xml 11,837,586 1c32b4885c1c0fade809d9e691fb2454
paf paf.ttl text/turtle 2,939,056 97c009e0ff775deeca44f03188966781
pro-ensembl-closeMatch-linkset pro-ensembl-closeMatch-linkset.ttl text/turtle 3,043 2b97a2f648b35f094f2f99ca7298d6e5
pro-ensemblbacteria-closeMatch-linkset pro-ensemblbacteria-closeMatch-linkset.ttl text/turtle 94,088 1c9c6a60398acc540e0cc429038da3ae
pro-hgnc-closeMatch-linkset pro-hgnc-closeMatch-linkset.ttl text/turtle 1,584,164 f31315a1f392c0908f0bebb85148dc64
pro-mgi-closeMatch-linkset pro-mgi-closeMatch-linkset.ttl text/turtle 1,371,965 9595ff5e4246aad532b6ac8c00290ef6
pro-ncbigene-closeMatch-linkset pro-ncbigene-closeMatch-linkset.ttl text/turtle 266,420 bd9bec03b88cdb730719da3402df3245
pro-reactome-closeMatch-linkset pro-reactome-closeMatch-linkset.ttl text/turtle 1,503,121 efb154be21cc23391297439bcc67fae9
pro-reactome-exactMatch-linkset pro-reactome-exactMatch-linkset.ttl text/turtle 2,267,973 c111e4d60c46bc30113c6cb1b1899b46
pro-rgd-closeMatch-linkset pro-rgd-closeMatch-linkset.ttl text/turtle 646,957 6d002f9818885122c8f6e37a682e594b
pro-sgd-closeMatch-linkset pro-sgd-closeMatch-linkset.ttl text/turtle 121,130 8faefbbf505466937c5561ab925164c3
pro-uniprotkb-closeMatch-linkset pro-uniprotkb-closeMatch-linkset.ttl text/turtle 13,581,449 5e4a8beaafaa25fe7b314ee33b6f025e
pro-uniprotkb-exactMatch-linkset pro-uniprotkb-exactMatch-linkset.ttl text/turtle 25,521,396 e2c9b68bfd9eb76642f7bec5ae4c2a42
pro-uniprotkbvar-closeMatch-linkset pro-uniprotkbvar-closeMatch-linkset.ttl text/turtle 51,821 6bd5a188d27a5f8edcf68826b28fc72f
pro-uniprotkbvar-exactMatch-linkset pro-uniprotkbvar-exactMatch-linkset.ttl text/turtle 79,198 da7efa1c2108d61adb338eeee2fa0665
pro-wormbase-closeMatch-linkset pro-wormbase-closeMatch-linkset.ttl text/turtle 202,437 9b00ea939e6216c5ff7e7c5ec657118c
void.rdf void.rdf application/rdf+xml 507,274 cd656966e11397217787ac9b9b55204d
void void.ttl text/turtle 152,983 f355cb52687c59c451840a6d8b3e1024